Niki McCallum

Publications

Journals

• Coulter, M.; Entizne, J.C.; Guo, W.; Bayer, M.; Wonneberger, R.; Milne, L.; Schreiber, M.; Haaning, A.; Muehlbauer, G.J.; McCallum, N.; Fuller, J.; Simpson, C.; Stein, N.; Brown, J.W.S.; Waugh, R.; Zhang, R. (2022) BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification, The Plant Journal, 111(4), 1183-1202
• Barakate, A.; Orr, J.; Schreiber, M.; Colas, I.; Lewandowska, D.; McCallum, N.; Macaulay, M.; Morris, J.; Arrieta, M.; Hedley, P.E.; Ramsay, L.; Waugh, R. (2021) Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I., Frontiers in Plant Science, 11.
• Schreiber, M.; Barakate, A.; Uzrek, N.; Macaulay, M.; Sourdille, A.; Morris, J.; Hedley, P.E.; Ramsay, L.; Waugh, R. (2019) A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing., Plant Methods, 15, Article No. 99.
• Lewandowska, D.; Zhang, R.; Colas, I.; Uzrek, N.; Waugh, R. (2019) Application of a sensitive and reproducible label-free proteomic approach to explore the proteome of individual meiotic-phase barley anthers., Frontiers in Plant Science, 10, Article No. 393.
• Oakey, H.; Shafiei, R.; Comadran, J.; Uzrek, N.; Cullis, B.; Gomez, L.D.; Whitehead, C.; McQueen-Mason, S.J.; Waugh, R.; Halpin, C. (2013) Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling., Biotechnology for Biofuels, 6, Article No. 185.
• Houston, K.; McKim, S.; Comadran, J.; Bonar, N.; Druka, I.; Uzrek, E.; Cirillo, E.; Guzy-Wrobelska, J.; Collins, N.; Halpin, C.; Hansson, M.; Dockter, C.; Druka, A.; Waugh, R. (2013) Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence., Proceedings of the National Academy of Sciences of the United States of America (PNAS), 110, 16675-16680.

Books / chapters

• Bayer, M.; Morris, J.; Booth, C.; Booth, A.; Uzrek, N.; Russell, J.R.; Waugh, R.; Hedley, P.E. (2019) Exome capture for variant discovery and analysis in barley, In: Harwood, W.A. (ed.) Barley: Methods and Protocols. Methods in Molecular Biology, Humana Press, New York, Volume 1900, 283-310

Conference posters / abstracts

• Schreiber, M.; Barakate, A.; Uzrek, N.; Colas, I.; Lewandowska, D.; Macaulay, M.; Mittmann, S.; Arrieta, M.; Clavijo, B.; Wright, J.; Ramsay, L.; Waugh, R. (2018) Developing bioinformatics resources to study meiosis in the barley cultivar Golden Promise., Plant and Animal Genome, Sa Diego, USA, 13-17 January 2018.
• Barakate, A.; Schreiber, M.; Stephens, J.; Davidson, D.; Uzrek, N.; Macaulay, M.; Colas, I.; Lewandowska, D.; Sourdille, A.; Arrieta, M.; Mittmann, S.; Ramsay, L.; Waugh, R. (2018) Targeted mutagenesis of meiotic genes in barley (Hordeum vulgare): Understanding and manipulating meiotic crossovers., Monogram 2018, Norwich, UK, 24-26 April 2018.
• Barakate, A.; Stephens, J.; Colas, I.; Schreiber, M.; Lewandowska, D.; Uzrek, N.; Macaulay, M.; Arrieta, M.; Mittmann, S.; Ramsay, L.; Waugh, R. (2017) Understanding and manipulating meiotic crossovers in barley (Hordeum vulgare)., British Meiosis Meeting, Dundee, 19-20 April 2017. Poster
• Lewandowska, D.; Uzrek, N.; Ten Have, S.; Hodge, K.; Colas, I.; Barakate, A.; Ramsay, L.; Waugh, R. (2017) Proteomic profile of barley male meiocytes at early stages of meiosis., British Meiosis Meeting, Dundee, 19-20 April 2017. Poster.